| S.No | AISHE Code | Institute Name | Established Year |
|---|---|---|---|
| 46101 | C-54364 | Linke Sanskrit Mahavidyalaya | 1983 |
| 46102 | C-50871 | Sanskrit Mahavidyalaya, Samdong | 1997 |
| 46103 | C-52375 | Sikkim Institute of Higher Nyingma Studies | 1964 |
| 46104 | C-8624 | Sikkim Manipal College of Nursing (Smcon) | 2001 |
| 46105 | C-8626 | Sikkim Manipal College of Physiotherapy (Smcop) | 2001 |
| 46106 | C-8625 | Sikkim Manipal Institute of Medical Sciences (Smims) | 2001 |
| 46107 | C-8627 | Sikkim Manipal Institute of Technology (Smit) | 1997 |
| 46108 | C-47716 | Sikkim Professional College of Arts and Sciences | 2011 |
| 46109 | C-47717 | Sikkim Professional College of Nursing | 2010 |
| 46110 | C-47718 | Sikkim Professional College of Pharmaceutical Sciences | 2010 |
